Effects of Temperature Control Algorithms on Transport Properties and Kinetics in Molecular Dynamics Simulations | Journal of Chemical Theory and Computation
Anomalous effects of velocity rescaling algorithms: the flying ice cube effect revisited arXiv:1805.02295v2 [physics.comp-ph]
Molecular dynamics: thermostats and barostats
From molecular dynamics to hydrodynamics: A novel Galilean invariant thermostat: The Journal of Chemical Physics: Vol 122, No 11
Complex reaction processes in combustion unraveled by neural network-based molecular dynamics simulation | Nature Communications
On the effect of the thermostat in non-equilibrium molecular dynamics simulations | SpringerLink
JMSE | Free Full-Text | Effect of Depth-Induced Breaking on Wind Wave Simulations in Shallow Nearshore Waters off Northern Taiwan during the Passage of Two Super Typhoons
Virial-based Berendsen barostat on GPUs using AMOEBA in Tinker-OpenMM - ScienceDirect
Anomalous effects of velocity rescaling algorithms: the flying ice cube effect revisited arXiv:1805.02295v2 [physics.comp-ph]
PDF) On The Berendsen Thermostat
Nanomaterials | Free Full-Text | Revisiting the Rate-Dependent Mechanical Response of Typical Silicon Structures via Molecular Dynamics
The 'hidden side' of spin labeled oligonucleotides: Molecular Dynamics study focusing on the EPR-silent components of base pairing | bioRxiv
Molecular dynamics: thermostats & barostats
Controlling Temperature – Practical considerations for Molecular Dynamics
PDF) A New Algorithm for Contact Angle Estimation in Molecular Dynamics | Sumith Yesudasan - Academia.edu
Anomalous effects of velocity rescaling algorithms: the flying ice cube effect revisited arXiv:1805.02295v2 [physics.comp-ph]
Detecting reactions from MD trajectories: ChemTraYzer2 — Tutorials 2022.1 documentation
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nanoHUB.org - Resources: [Illinois] PHYS466 2013 Lecture 11: Constant Pressure and Temp: Watch Presentation
On the Temperature and Pressure Dependence of a Range of Properties of a Type of Water Model Commonly Used in High-Temperature Protein Unfolding Simulations: Biophysical Journal
Full article: Molecular dynamics simulations on aqueous solution confined in charged nanochannels: asymmetric effect of surface charge
Molecular Dynamics at Constant Temperature | Qijing Zheng
Controlling Temperature – Practical considerations for Molecular Dynamics
Removing Thermostat Distortions of Protein Dynamics in Constant-Temperature Molecular Dynamics Simulations | Journal of Chemical Theory and Computation
Thermostat Algorithms for Molecular Dynamics Simulations
FIG. S. Velocity distribution function obtained from Nose-Hoover chain... | Download Scientific Diagram
